NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10052212

Scaffold Ga0315907_10052212


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10052212 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3593
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F036695Metagenome169N
F049433Metagenome146N
F049442Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100522125F049433N/AMKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQKEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDDTLFSLIEKGDLNKAYRLHRNLNDTVNYVDYELLNDMLENPETKDSIVKVLPNIKSLLTNYFS
Ga0315907_100522126F049442N/AMNKENLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYELARELFGNIIGSKNWIDIEFKKYPKI
Ga0315907_100522127F026552N/AMDIPKVIEKLMNRDSFLNLLDNDIIEKFEVSASPFESKILVVKMFLNATKDELKGTGESTPPLSQWELRGKLWKSYNLDPAWWQSSIIPNKILKPLVGKDYFLKILIFVLDKNGAHVLTE
Ga0315907_100522129F036695N/AKIIPPNDIVHKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETIVKKILRPLGLLKSISWGVLIVIDASGNRIIEHSMIKN
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