NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10052383

Scaffold Ga0315907_10052383


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10052383 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3587
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013526Metagenome / Metatranscriptome270Y
F014496Metagenome / Metatranscriptome262Y
F017484Metagenome / Metatranscriptome240Y
F083931Metagenome / Metatranscriptome112Y
F085710Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1005238310F017484AGGTGGMATLEIFEMNSNGAGWVSLENASADTKLDLELAILTKAEVKMLCFKCHVEIPRGNVCVNHKDVKGAVYFD
Ga0315907_1005238312F085710AGGMDYFDYYDEVYTDIYLEFGADSVSDPAHAEALLGKSQS
Ga0315907_100523835F083931AGGMTTSTYIDYPFTANGVNFISRVYSHSDMAKVIANLPEGIFAKLNQDAVSELIGDPSLLSTPELLQELTHINAGGSGAFIMLGDN
Ga0315907_100523837F014496AGGMKTYSIEDLLVGQTYFPRSLARRFQGGEITFAEKREDIWLDGYEAYAIRFRVGQSIKQNWATVAVKVAD
Ga0315907_100523839F013526AGGAGLTKKNILISFVTEADTDLDAIFALNKVMYKLPESDVVKFDAFEVLDVVE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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