NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10058353

Scaffold Ga0315907_10058353


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10058353 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3373
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100583534F055557AGGAMRMKISHEQEWDAARVAIERVEEIDGHPDHASRYNKQLNFHDYILEIAESIGAEFAVAKYFGIQDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDSDRSTDIAILVTGKSPNYVLKGWIPVAIAKNQKWRRRDQPTYWVDQYNLHPIENLRRSSHGEATLPMQG
Ga0315907_100583536F015073AGGCGGMGFLDNYETVNQKVKRLHLTYPTNRIETSIIDWQPEKGFILIECRIFRHYEDEKPAAIDYAHGMVGAYNAQMKRWYVEDTVSSAIGRCASVVLGTDEKPSREDMTQVEHMPKAFVEDDPWAKPIWEEGFTTAKTAVQEIESKLGGELIAEAPICAHGHMLLKEGVSPKTSKAYRGHVCTEKVKANQCSPIWYVLASDGTWKVQL
Ga0315907_100583537F085385GGAGMYTIMEVAAWMMLGILTGFTGGYTLGLKEGKREGFIRGKIAARKAVNQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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