NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10078868

Scaffold Ga0315907_10078868


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10078868 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2843
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039637Metagenome / Metatranscriptome163N
F057377Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100788682F057377GAGMKAVFSTRDLKLAAILATLGFEFENPTRPATRIKRESGDESTVFHFLADSPTGQRADDVMRSFAKGEEFVTAQPDSPVSYMMAVLKNRDELVSVVKQTPRQIVFERNGKIISISENATAEDKARFAKFI
Ga0315907_100788683F039637N/AMKKTKENPELETDDEALREAGMREGTRTSGKFKLRPCVPGTISIIRSNMLEKRDEFWFVAAFAFVHTAPLDDVLAVDSDPVAFNKAVRKWQIENIADLEEQNELSRLVSAAWDKVNASETRAQHASAPTGSSGGK
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