NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10102328

Scaffold Ga0315907_10102328


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10102328 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005348Metagenome / Metatranscriptome403Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101023282F000808AGGAGMEYTYSLTTSYDGELVNTLRVSDMLEAVSAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVVIK
Ga0315907_101023283F018352AGGAMAKVKEMLSTILTCSYCYGQGWQFVGNDVDFDVWACECNPYNIPADEVMAYHELFKTKEN
Ga0315907_101023285F005348AGGMINSVMAFDCDECNGQGLIFWGNDLDYDVEQCDCNDFALGNLFTTKEAE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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