Scaffold Ga0315907_10553920

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315907_10553920

Scaffold Ga0315907_10553920

Overview

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10553920 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	900
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005480	Metagenome / Metatranscriptome	399	Y
F075842	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_105539201	F075842	N/A	YTLCTDIANSAFGVLYEDSNGNIGYADQTHRQDYLAANGYTTLDANHANGLGLAATTRAGDLRNYFNIIYDNNGNQSYTAQDLASQSLYGTYAESYTSRIKSTSDAEALADRYIELRANPYPKFQSITFTLGNPEIDDADRDALINIFLGQPVWIQNLPPNIANGEFQGYIEGWTFRASLNNLSLTFNASPINFSQVAVKWEQVNAAETWNTLNTSLTWLDAIGVVA
Ga0315907_105539202	F005480	AGGAG	MATTTTNFGWDIPQSTDLVKDGATAIAALGQDIDTAFVDLKGGTTGQVLAKASGSDLDFSWVAQDDSNAIQN

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