NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10624390

Scaffold Ga0315907_10624390


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10624390 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F023834Metagenome208Y
F093528Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_106243901F005558N/AYWSEIAQLTHATQVERFNWCMCEDNEGNENPYSDCPKENK
Ga0315907_106243902F093528AGGAGMSEERSVTHVMTIVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPEKTINDVVKEKIEEEGE
Ga0315907_106243905F023834AGAAGGMNKEYWQAKAELCRDLALVQIQEEDTEKEAGMNLMRMTYALSMVDAY

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