NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0316219_1000434

Scaffold Ga0316219_1000434


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1000434 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57373
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (74.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013252Metagenome273Y
F017424Metagenome / Metatranscriptome241Y
F043202Metagenome156Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0316219_10004343F013252AGGAMATKKQDGGELGFRKTYKMTGTPGNAGGPGEKTIDAGSSGSKRANNAVLNGNKVKSSKVGPDKNLKEVKTGNFY
Ga0316219_10004344F017424N/AMKDFLSTIISRTRDEKRKTAETVAAGYNVHDFSDYQRLVGRHEAFQVVLDIIDELLTEDDES
Ga0316219_100043453F058556AGGAMTTFIVEHLVKGYPLFDTIQGVEDIDLSMFKDVQTLWVCDTPEEILAVETELRGKHARSS
Ga0316219_100043457F043202GAGGMTTQKSLPPSPLTSKPYYVADTGHFGIKVKICFSDSAFQHAVKDSGITTKHNALDLGLAESHIIQQEGTHHAMLAIVFNYEEMAKLDALERMGVIYHEVSHTTTHIFEYIGETNIGDESRSYLGEHVFKQVFAAYATEDETRERTRKRDRKTPEQVNKAILGVILQMAELNNGSAGSDSVPEPKSVPRRTKNSNRSIEPKTSARIRRFG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.