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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031759 Open in IMG/M |
| Scaffold ID | Ga0316219_1000807 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38481 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030957 | Metagenome | 183 | N |
| F032513 | Metagenome | 179 | N |
| F042703 | Metagenome / Metatranscriptome | 157 | N |
| F094792 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316219_100080711 | F030957 | GAG | MNTSTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLNQWAGIAVSSTSPSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPCEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPSGLSVAYQYTAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ |
| Ga0316219_100080714 | F094792 | GGAG | MPPTGIQTFYYGKNLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWAASEGLATSPNFTAPDYNQSVTITGDVLYMVQNQFFQITNQFAADGLTPLYFYHNFGQSVSGATILNLDGSVVTPAPTVLFSGNWMYHDVPSTLPYQVRYVDSAGRVKISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRQGIYNDPNHLPDIVVFDSNQEIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVAVVPTVLTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRATSNPLQEIYHQVFNESGPIAGMTNDPNPPTWSGQTPASGTVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGTIAAIRYYDPEGNESV |
| Ga0316219_100080715 | F032513 | GAG | MAKPFYLIWQEGTTVLEGYDGANWIDGQLTFPIVFPGVTTTPLALSLSSSASVNLTFETLINVAFYLTGSDAPTVQGEWPYITDAYGNATASVTGGVEISFDNGLTWNRFSNTVGLESTSSTWLPLPQEAVGSVGTAGQIGAFGTAHMLVRYVIPPSVSLTKVLDVQLQVDCDVV |
| Ga0316219_10008076 | F042703 | GAG | MKPDTSTPNPVHLAIVSPCSSCQNQLTVSHDGMPACPRRVAQQNIQYMQSAGIDTTAVQHLALYGTEGAAQAGSGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNQLCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMTTDGSALPVLIDGFAQKVNFIFNHPRTPLNKDLCPAGT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |