NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1000932

Scaffold Ga0316219_1000932


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1000932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35196
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (81.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012318Metagenome / Metatranscriptome281Y
F020298Metagenome / Metatranscriptome224Y
F028086Metagenome192Y
F059611Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0316219_100093228F012318AGGAGMAYNSAFSPFGPTYLVGTSAVQIKSNNNVYPSGYRIVNLTSSLVRVGWLPQEPSDASVTPVATTPTAAGIANVLSIPANAVGVFSGIPPNAWFIASAATSVEITPGEGLA
Ga0316219_100093237F020298N/AMTSPNFYIPYPIPQSVEEIQADMNAVIYQPGVPQELQDEWKNIQNSPEVQADIDQAEANSDSMENE
Ga0316219_100093247F059611GGAMRDFSLPFLVSKRLLDEYYKAMIAQDRQKAYQIANDLVEMTLKLENIAHADA
Ga0316219_10009327F028086GGAMTDEKIPFAGNVKVPSDDCEEAFFAVYPGLFYEGSTALNLWTQAWQAALDYVENKKPIIQLI
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