NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315322_10002791

Scaffold Ga0315322_10002791


Overview

Basic Information
Taxon OID3300031766 Open in IMG/M
Scaffold IDGa0315322_10002791 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13553
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (51.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F059455Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0315322_1000279115F007770AGGMSGEQLSVSFRRTSMTSKSNDELLREFQKIVYASRVTTHMKWYGEAYSVDMVEHGDEELQKWQQESVAIKNTFQFTISVYDSWYKDSDLYESHKRDDSFVTLANEFAKDNWLMYFSEGFPAEWVETETIDGKECWNHFNVKPDDKNIDKICKIYHNYGQLMVRAEHFGQTEGMKSSYWEQARESIKSIMEKKEYAK
Ga0315322_1000279130F059455GAGGMNNPLLEEIVWSKGRTKAELAKQTTWSSSKDWSGLSGLKILCFGHNTNVGITAITSQGVSHNKYLQIPVDKIEEVCNSLMQAKKLMESNNEN
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