NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315322_10040721

Scaffold Ga0315322_10040721


Overview

Basic Information
Taxon OID3300031766 Open in IMG/M
Scaffold IDGa0315322_10040721 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007526Metagenome / Metatranscriptome349Y
F043385Metagenome156Y
F083251Metagenome113N
F093725Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315322_1004072110F007526N/AMNREELKQLWFSLPHPTPKKEVHVINVTQLGANHFECKKIRDDSNGYSTYSSNWRTLSEAIAFARKLQNDAPEFNIIMN
Ga0315322_1004072113F093725N/AMNKEKVEQHLENAKRFRKANYKPLMEYINWSEISQDYDLKTGDLDYSDYNKLEIILSNFVKNNK
Ga0315322_100407218F083251N/AMKDLNKINKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTNN
Ga0315322_100407219F043385N/AMIIRKVSGLWIVEREHSGQIIFSHKKRMTCYEWIFKSVNYA
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