NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1000379

Scaffold Ga0308401_1000379


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000379 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13022
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022604Metagenome / Metatranscriptome213N
F025421Metagenome / Metatranscriptome201Y
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y
F028964Metagenome / Metatranscriptome190N
F038570Metagenome / Metatranscriptome165N
F059420Metagenome134Y
F061432Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100037910F059420AGGAGMEIELYRGTSSLTTLHYRNAPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLIAGQQGRARRIVIVLDVQGTSMVNLHAAIRELETHTRWRKGTPLELRVRAQAASPWNSIEVVLEQMSAQFEDDQYRATLTLRFACRSVYWREGIGVFPSSNSTLIGNAFVINLSTMTFTPITGISEAIINIDYREASNEWIIFTTTQVWRAPAVGGAAAFVGSVANSTNLRGCVAHDGSILAVAQGVNQLVRFTYPSSAPAVLGAFNGTPFRIRRIGTSYASVGEFSQYQTTGGLAGYVTTDVNGNIINTFSPFSNSIIFPGGGRIRDVLIKDNIGVAIAHRAPSPSQSWVVVWSGQVAPYFVAEGASSWGPFEIDQSSPIDDVTICADSSIHAGRTFNTLCRLRNLGGIVPYAYPTVNVGSVQDGCAVERFAFTTSEPRKAFRLGDDGTVMPLFTANNNSAAVQRVGNLMCVGYVSTTSVWTPLGVNVGVISNTGATAEIVPRLDGIAVPVFSCYSKVDTEILGEVIDPQTQAANYEPKYHSGGTVTPLPGTNYERMFRGTANEQAFAYWFAVGGSVASNNITLNRYKHDWR
Ga0308401_100037912F025421GGAMIDLTKVRRIDRNAPGSFMEYARLQSVIAEGDLMAIARALENYGVDTRELSFNELVDVIKHIAGEPAPLPATSATE
Ga0308401_100037913F038570AGGAGMPATHLRRVQLGQQSTFNTPVAATSILRGVKDGSVTINHNDAVVEELGRTASDLVVVSQRHAEGELELQTTYEDILYGLFGLFGPVAPSGGARTFNAPVVNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQATALTGSLPTRIVTPVLSRHASWFVDPTGTAHGTTPVPGTVIEAELSINTNRHLKMFEGAQPLDWGEGRWEAQLTLTAEFNATAKAWVDALLTDRVARNIRANFVETANMRELRIDFVGLIAESPELFGDRDGNMTVELTFNALVAGPLNNWLQIRTINGVGTLP
Ga0308401_100037915F022604GAGGMLSTVNAVYTVVAAVPGIVAAYTTVPMSVTTATLPMALVTPVGENRRQHAHELVRIETLVRVRIVHSPVAQGITEAQQSALYALADAVMMALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVMARVVEKI
Ga0308401_10003793F026459AGGAGMNSRKVEMLRTINAIESTIRPSANSISMLISALTAMSSGETIRRALERLSKRAPEREISSATELVRALYDIGEGVSALKISRLIAELKEGKTVDATYGLYALVDLLPHDAYMSFGFAVESAQIRCGEHPNPHELLRDIDFDREGFRFGPAWEFWGERSPEAIKTARAAFVAHLLHAAGLADEPDYPEPLAD
Ga0308401_10003795F026171GGAGMSRELRTLRAAVKAARLADLPVAKALKALADMPEARAFQLKPDVLRRMLIESLPEQYATFLFDQAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE
Ga0308401_10003798F061432GGGGGMNERIDLLERGDSFAPATARVQWVGSANVPANSDVTIPVTTVYEVRGNIFEYVSSDQALRIKQSGVIGYTVNVVCSATGVGAINVLMRQASPFHEWPLVIQPYYLHAGFAFLTGGVRLVGIPPGGANYQIRIANTLGTGSFTLNIVDIFLVYLGRR
Ga0308401_10003799F028964AGGMIGAEVTLALTSLRQPGTRTGAIALSGSFERRAMEVAECELEIRVGPPSYGLSAYGDVLMVMLPDRREYYFVTAIERRNIYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFASSFRDYWIITPDNVPPSVDVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAVKDAAGNYGVEPSIALVFAHGLPRHGLFRPRWSGTVKYEAWVYDRSQPAAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGDNQRCAGIAHVVSERYTVTGGQVSSAEVGVVQI
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