NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308401_1000755

Scaffold Ga0308401_1000755


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1000755 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9185
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F076977Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308401_10007551F076977N/ASRKDGKVYRIVTVYGDLMSGETVLCQVDGYDVFVDSPDYSRGEMVELPARLQFLRDGSGKPVIKLYVDEGVR
Ga0308401_100075511F000642GGTGGMQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLVYDDLGGWRALPAVYADSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVVGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308401_100075516F002229GGAGGMVTLLTADGVEEIDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFNRRLIVTLAPAGWCWVMDGFGRGYWSHALSAVVADVCAVYGGCVEED
Ga0308401_10007552F002372AGGGGGMPTRREDALWSVVHQRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVYEYRADPSLGGAEAVWA
Ga0308401_10007559F000855GAGGMDWIEDFWSKVISWLDQLSASIHNNIISWINSLIDIWNGWMDSLLHPAQAMPSNSALRWIVDWLGGIADYTRLMYLLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.