Basic Information | |
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Taxon OID | 3300031767 Open in IMG/M |
Scaffold ID | Ga0308401_1001724 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5959 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002982 | Metagenome / Metatranscriptome | 515 | Y |
F006418 | Metagenome / Metatranscriptome | 373 | Y |
F007976 | Metagenome / Metatranscriptome | 341 | Y |
F010840 | Metagenome / Metatranscriptome | 298 | Y |
F048124 | Metagenome / Metatranscriptome | 148 | Y |
F075805 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308401_100172411 | F006418 | AGGAG | MPKRRSALKPQPAREIVIEKGSDYRILFDRETRDYAVEYRGEPVGWRPTEAEARRLVEQLRYEDAKRA |
Ga0308401_100172412 | F010840 | AGGAG | MNLPFSQPLDKVTFGALAAATVIILTWALCEFVGIELPAEVQAALAVIFGYFVSYHIPLNETEAEAIARKYYRNYK |
Ga0308401_10017244 | F048124 | AGGA | MATISIWRGYRHWNWDEENDYEVVTYEDARELGAVRFEDENGDIQYRIIRWDEGIVVFFVKREGHYCEAEIFEYSDLEAAAKDYAFVLRKAGVI |
Ga0308401_10017246 | F075805 | AGGAGG | MRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYGASVRELDEWLSQYEEEE |
Ga0308401_10017247 | F002982 | AGGAGG | MKIAFERTPTAICAVLTEPGECDRIITVARPSDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYEAEAATLSEALARCVWALAR |
Ga0308401_10017248 | F007976 | AGGA | MPSTELSNFLRVALEIQATPFAGVHVDDGVILATDGVMLVTKKFDDKVFLRGRGSISPKAARVLETLAAETWIGSIAVVGNRVSVTAQTTRYEENVGEVAGEYCDVTLPEFYCPRAPVARMLAVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGKNSRLSVRRNSSGWLAFGDQWGYTFAVTPFVKHN |
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