NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308401_1001724

Scaffold Ga0308401_1001724


Overview

Basic Information
Taxon OID3300031767 Open in IMG/M
Scaffold IDGa0308401_1001724 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5959
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308401_100172411F006418AGGAGMPKRRSALKPQPAREIVIEKGSDYRILFDRETRDYAVEYRGEPVGWRPTEAEARRLVEQLRYEDAKRA
Ga0308401_100172412F010840AGGAGMNLPFSQPLDKVTFGALAAATVIILTWALCEFVGIELPAEVQAALAVIFGYFVSYHIPLNETEAEAIARKYYRNYK
Ga0308401_10017244F048124AGGAMATISIWRGYRHWNWDEENDYEVVTYEDARELGAVRFEDENGDIQYRIIRWDEGIVVFFVKREGHYCEAEIFEYSDLEAAAKDYAFVLRKAGVI
Ga0308401_10017246F075805AGGAGGMRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEIDEDRTDERAFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWRDDLVRIGAYGASVRELDEWLSQYEEEE
Ga0308401_10017247F002982AGGAGGMKIAFERTPTAICAVLTEPGECDRIITVARPSDAFRAFGIFTRDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYEAEAATLSEALARCVWALAR
Ga0308401_10017248F007976AGGAMPSTELSNFLRVALEIQATPFAGVHVDDGVILATDGVMLVTKKFDDKVFLRGRGSISPKAARVLETLAAETWIGSIAVVGNRVSVTAQTTRYEENVGEVAGEYCDVTLPEFYCPRAPVARMLAVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGKNSRLSVRRNSSGWLAFGDQWGYTFAVTPFVKHN
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