Basic Information | |
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Taxon OID | 3300031767 Open in IMG/M |
Scaffold ID | Ga0308401_1012168 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2050 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035590 | Metagenome / Metatranscriptome | 171 | N |
F042114 | Metagenome / Metatranscriptome | 158 | Y |
F043791 | Metagenome / Metatranscriptome | 155 | N |
F052993 | Metagenome / Metatranscriptome | 141 | N |
Protein ID | Family | RBS | Sequence |
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Ga0308401_10121681 | F042114 | N/A | FKAAQRRVPFLYQHSSWLALYQPIDLQRARLFIINSHRYPQPNEYANATTEMAIFVAHAQPKRFERNGWKCLQFDLERKTLQ |
Ga0308401_10121682 | F043791 | AGGAG | MIENVLIAGLATVYFAFVFTAKRGPFDFFAKIRAAAKRIPVLGYHLSCPTCLSLSSGALLLALTFTPLAFLVHIMAVAGIVLALHGMAGYWHSKDDE |
Ga0308401_10121683 | F052993 | AGG | MSSLHQFKARAFQRVAKRFDLRCYAFSYRDNQWLIAIRGNIVILSPTLIPIAPDIIDIRRLGNEKDYELFLALTGIGVRQSLRYQLVATGNFVTLYPKYNRAIFARSNQHVYSTRWRRIALAHAQYVSRRVKQPPCMQIAEDVERGKLMIALNYVRLGSFYIFVNGIPIDYAYPFHEQCSPQVYFGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKSASLDYHGRHEQEEAYPGTD |
Ga0308401_10121684 | F035590 | N/A | MVGMNKKKLILEQIERLLEHYPYDGRDIFYLNFDGLVTLTFSVDDDGIVTLEEASVDGRFAIDLNRI |
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