NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318521_10255835

Scaffold Ga0318521_10255835


Overview

Basic Information
Taxon OID3300031770 Open in IMG/M
Scaffold IDGa0318521_10255835 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001727Metagenome / Metatranscriptome645Y
F038170Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0318521_102558351F001727N/ARRAIEYAGQMLIDPAIAATLLEDAAATVSRTINSKRYSSQSGVLDLPSYLFRAFIRRVDRAKKRQLIQEAAIVAHSAESPNSTDPKADLDLKILIDELLTRSDSVTRDMFYRRIQGFSWKEIGSSYGIADHAAESRFSQAIRKLAQRLGLKADV
Ga0318521_102558352F038170N/AMKTRVKNRSAFEGKGKDLLDFARTYLSNAFPNPDREGCPPDASLQSLAFNPKESHPAVTEHLAACSPCFRRYAELLAQLKSRRHAEEGLPWRRISAWSTAHPALAGTALACALFIAIGFGLLLRRIRQPNTPIDTNQRPSPTEPVPSTVAYSPFSLDLSALSHERGSEPSTSDV
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