NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315288_10224854

Scaffold Ga0315288_10224854


Overview

Basic Information
Taxon OID3300031772 Open in IMG/M
Scaffold IDGa0315288_10224854 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2018
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021301Metagenome / Metatranscriptome219N
F099283Metagenome103N
F104717Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315288_102248541F099283GAGVQHLLHKWAQSNKSGRIWNEWIQSLFCYVALTITQQPDSYHPGFNDTNFVITESSGGIYTSSNFKFIADVKVATTSIAKLKAPIYFGSVNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVSYAQAQYLATSSSAKFLTNVRTRYIHRTQKDWLYALKGDATSVLITYSDASTQTFTLPSSKVVRIPVGSQLTIPGAATYFDVVLKLGGTAKSETYRITI
Ga0315288_102248542F104717N/ALEIIDKIVKGDRTKWDFILMMPLIEFLNAMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEML
Ga0315288_102248543F021301N/AWLLHLPLIAKLTIDQEHFTLHNMNWKNITIHQLQEIHSCRDMSDLERQMNILAIALNVSMDEVESMTLDKLTIEFAKLSFLNELPKAPIKFTFKLGGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLHKIVALLSVEVDFFGRNKKVVDAQSHYEDKCGLMMGLPVPLPYTYALFFSEVYPELLKSILYSLKEEMKDMTEQLTKAQ
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