NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315332_10007031

Scaffold Ga0315332_10007031


Overview

Basic Information
Taxon OID3300031773 Open in IMG/M
Scaffold IDGa0315332_10007031 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6582
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006717Metagenome366Y
F007771Metagenome / Metatranscriptome345Y
F009558Metagenome316Y
F032811Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0315332_1000703110F007771N/AMETKIYAKCIDKDVRLALYGMLEYSAVKLFPRRMKNTSIKLHLSHYDWDGEAMIEEGYTGRNPRNFKIVIDPYRMMKDDWDRELNYSEWVSKLLRTLAHEMVHVKQYIMGELTYKKGAMCWYGNEVGWMSAEEYFCSPHEVEAYGKEKWLQLGYTAVWNKIKNKEI
Ga0315332_1000703111F009558GAGMSSWEAKHCWVNQFGIIEHDIFAHIPPQHYVVKWKDGFERKEKHFDNKKEAKAFFRTVRKTATHFYRIVKWH
Ga0315332_1000703113F032811GAGMRIAQGCYFEQEEDEPIDPIRGKKTTFNIQEPIYRRRSELEDIPDNYSERIMKLRGVGERTPEREVKTPDGFAVTIAYNKSGYQVIPKGDLKI
Ga0315332_1000703114F006717AGGAGMIELWIALVLTWHPSVERVVDKEFNSEKECWDYYETEIAPNTTLGEGKWGRQVLTAQDRRPDKNYFFKTNWDYPIRVYRGLNYDISKRGHDQVWLSCEPKYARIYNE

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