NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10001674

Scaffold Ga0315331_10001674


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10001674 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16675
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014085Metagenome / Metatranscriptome266Y
F021540Metagenome / Metatranscriptome218Y
F022423Metagenome / Metatranscriptome214Y
F038249Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1000167411F021540GGAMKVIEKIYDAVDGDKYLMETQACFHCGQVGEVTIEAQELFYLNQGWLVQLAVKSLDEDEREQLISGVHPNCWKDMFGEEE
Ga0315331_1000167425F022423N/AMQDLSFITTTIQTMTASVQNTETLHKIIGTANQYAKTMKFSNDKTQWSDEQLDKYLAMIEKLIDMPVEYTQDDFDKMSLEEKLNAAGLAATDITPGLQGAGDMLGGIVEEVQEQNKYRDDLKCPYCKAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNTDIPKEWNV
Ga0315331_1000167427F038249AGGAGGMIPESFRGEDIPAYIKSKTQLVAYILTRYMGESPISNWEFVAELYCHRFGGIIHNLRQEGYKITTLPAKKRGLVHYYCTELPTKAAIS
Ga0315331_1000167431F014085AGAAGMNLSAIREEAMQRAGGKCEWPYCNDNKWLELAHIQGIGMGGNPKRKFDINNVCILCKHHHDVYDGRQRVGASVAYRELLIGYLQRERLSI
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