NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10009210

Scaffold Ga0315331_10009210


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10009210 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7338
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (38.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019907Metagenome / Metatranscriptome227Y
F033254Metagenome / Metatranscriptome178Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1000921014F033254GAGMRKHTHEKLWSFADEHVIDGMIYSHDIEKWVTVEEYTDVHYGTL
Ga0315331_1000921015F019907N/AMYNHSALIRIAHKLFPEKNVFSLTKKEQQKVLAIYKEFY
Ga0315331_100092103F066695AGAAGMELLTDDIIHEALQADGIMQEPDANWLIEYIESEYGGSLDNVDTWSDTRGLKVYSETTYDGYDIYWCTFEERPYVSNDGYYYEDHQAWSERVLESLMNGDNVWIEPHIWDDMEYEFNNELDQWWTDMYEDVLYVDKKDELLESGDYYEEQQ
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