NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1003689

Scaffold Ga0308415_1003689


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1003689 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5930
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051766Metagenome / Metatranscriptome143N
F062487Metagenome / Metatranscriptome130N
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N
F106198Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_100368911F062487AGGVESVDVSNMVALLSREDRFALGINNYPRSIVWSAMMLLKANKVLNQSPTYPNAIRFGANRTTILIEAAFPYDRDVFTTTGGDIISAIIPITGLSPYSGVLSIPPAEPVFLELPDPDDSRLDSLEKFLVWCCMQYKVGLNRFTNLGDAISVLFFDEQQTGNYPTLRVKVNLPYSYTAYCCTGSIVRAVYELFVDNPCGSGVLSIDGRLILFDNNVLVDLGLIS
Ga0308415_10036894F051766AGGAMAIKKQGIVSGQYTFSGVEEDGIVTLTSQIDDIHIIEIQALVQLFNFVNPYDIPIMVENTIYQVTNVSAYSSASDILIYNTINTPRGNKTIIECEIKAIGIKPNSSVIFSTQEKWIIYPERNYRLDNESTQSFTFTNNSIAYLRLTGKRILPIQRISGTNNSL
Ga0308415_10036896F106198N/AMSNNLSIQEVIRNKHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGDPDVFTPIPPVIEERLRPLNPKLGVPTALPFEPRECTACFDNPQVQQGFSEYKVFVPFRPTDSKLKQSIKEIMQLPNVSRVKYSGETHVRGTKRIV
Ga0308415_10036897F091520N/AVASYVGNYVNDVGIQYKNIVLNTYFYDNGNRTSTTYDRDEMYLPTIFKSNTTRLSDKRATCQIEYSILRVAQCYISDNVYYEIPCPFQSGTSEFISFFTELNSNSMFRLVNLRGESLPYGYYLVLSSITG
Ga0308415_10036898F079732AGGAGGMPLMDATKMIDKYITDFGTEVENFSIKILEGYAEKVSEYVERTTENPCPAGELFRPRALIATFEDGTKVKYPIGDRSNLVARARELLSNNAVCIDYEGEYWPYVPSTLIQNTNYRAIPLGGFTNDGSKTVGTFNYQSDILGNIVQPFAIESEPAVLVTAAVNCLSDVVYGSGFCTGARSLNLKARRFRGKGLVAGDTKKTYSRDIKMSSTDPTSCGAANAPNYYCLSYIGESIKNLHLILPAS
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