NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1015449

Scaffold Ga0308415_1015449


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1015449 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2337
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10154492F000855AGGAGGMDWLEDFWTKIVSWFDELSAGVHNGVIGWVNSLVEVWNGWMDSLLHPAQAMPSSPLLRWIVGWLANIVDYTTLMYMLVDYVAYAWIVRQLLAAQLAIVTIGLAFRAWLVIRRVVLVS
Ga0308415_10154493F001381GAGMQYVVATLYVLVWLSLAAVAALVLPRMLLPAALLQLAVAYVMLRAVWLAAARDD
Ga0308415_10154494F000642AGGAGMQEMSIALALCAVGAAIWYMRRREAGAGRVRGWLLLYDDVGGWRVLAASYGDSGVVADGVAYPTSLPSLRVGRELVWIARCDAAALIEHQALERAREAAALASLWRGGGQWFDFLRIVGVVLPAAFAYFTWAQVAGLQALVAQILALVGDK
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