NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308415_1025622

Scaffold Ga0308415_1025622


Overview

Basic Information
Taxon OID3300031776 Open in IMG/M
Scaffold IDGa0308415_1025622 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1641
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052924Metagenome142N
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308415_10256221F093910N/AASPLEGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRIPLNQASIENVATAWGYESKNWVRHRVRISIAHKNIQGKYVQVRMVTPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308415_10256222F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIDGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQPGADIFAQVYSIFESEKSRLFYSRVFGDSLPGQSEDEKVVHAFLSFLEALAAALERGVGG
Ga0308415_10256223F052924AGGAGGMARAQYKTEEERELKQLSIGLSFLADEIRQFTRWVGTSPDPAGQAQEYRARLDRIFDRINQLRETDPNRVAAMERRIQAARQDLENALQQAARGVEEPKSFFRRLYDGITRVTITVLQTLGGVVGWIFRRRGGP
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