NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10027164

Scaffold Ga0315899_10027164


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10027164 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6040
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F014619Metagenome / Metatranscriptome261N
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N
F099167Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100271641F014619N/ANVVYENGILDDIKTNKLKFNEGSIYYPSVTLKRLVKYVKMGYDVEDVDLKLLTHAFYKSKKKAIDILDQDLATKKPIETYTGLK
Ga0315899_1002716410F008688N/AMNRFNKIMLGSLATILLTAMTVEPPKIKLYLITSYRGNDLIIEKIYLKKENAEKYRDMFKDSHNYTVEERELTE
Ga0315899_1002716411F007859GAGMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMVENSTNNVYTTYTNYYRAYYNCDGKITKITPNK
Ga0315899_1002716412F010081N/AMKEQIDSIIKKHALKMQEVDKTKSIPMIVKELDGIVYTMYRELYGLRDIRADNYYLNSFTADNKKGHCC
Ga0315899_100271642F099167N/AMDLVMNSKILRRTVDIAKAMCPLNLEHRCSHIAFLIKCGKIVHIGTNSCKSHPETLKYDYKNHQLVGLHAELSVCMKSGKEDLRDFKMVVLRVDRTGKLNNSKPCCGCQSVVKQFNVGEVWYSNSHGEIVKN
Ga0315899_100271644F019476N/AMNDKKLKSAKIVLDIEWESVDDSDLPSLWDWKRIKIPMDLTKVKYVGIQQSNGPENVSNWMGN
Ga0315899_100271645F024047GGAMTIVKKSDIVDWLKNAVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII
Ga0315899_100271648F009135AGGMSTNKAKYYLTINLPPNFDEVDADAIKADLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED
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