NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10038149

Scaffold Ga0315899_10038149


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10038149 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5052
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F006260Metagenome / Metatranscriptome377Y
F024782Metagenome / Metatranscriptome204Y
F036669Metagenome / Metatranscriptome169N
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1003814910F036669AGGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGHIKTKKTWLESINKTCTVQFYDYFSSNNTDYDYWIVYDAVFIEGKMKDIKLTTFEATPNSERKKKDIEFHKKMQEWDEFRKTRRYKYFLNPYNKVLKFICDKIYKALCFLSSRVWRVHNFLMIK
Ga0315899_1003814911F006260N/AMKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYVNTILDYVKDYKLDGVTQVDIEDYQLFRNFLYDVQEYKNKGN
Ga0315899_1003814914F024782N/AMIEKAIERLRAYNDWRTGKDERTMDEAGITPKQVTADIETVCNELEKLISMYASRY
Ga0315899_1003814915F102699GGAMHQPNYYLTLNLPKGFSREDAEKIQKDVLDFLEGKRHYGAKYDGKTGITVNVITVSTNHD
Ga0315899_100381499F001840N/AVKEEKESEFLICECYSHGLLVEKFDDEEVYLSLFERGLSGRTLGWSERLRWCWQILRYGKPWSDFLILNAENQKKLKEFL
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Institute for Fundamental Biomedical Research
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