NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10041949

Scaffold Ga0315899_10041949


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10041949 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4811
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y
F008128Metagenome / Metatranscriptome338Y
F013517Metagenome / Metatranscriptome270Y
F043890Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100419491F002333N/ATDGSEQVYAREVIKVAFTDYTQRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRLPNRPLDFDRDMEADESTPVVAEPWCSCGSYQRQLSNVSDFASEITGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMDAGYVPFPGTALPQLKSAIKKQ
Ga0315899_1004194910F008128N/AMKTIPVPKLTVSFEVDIEVEYNSFGGKTADEIAEALQDEIHNLVFELDQVIGMESHCTSIAPYN
Ga0315899_100419493F043890N/AMQKTYSLAACNPNSINKLQIEWIDELDGTGTLHIDWDDTDPDLQWWTDLGPESQESFIIESLREALDYYVD
Ga0315899_100419494F002738GGAMSIETYGLSSEQYEEFFEDNVAFSAKLYVKACQILRDNGAGAIDFKTTLDLYQEAVYQTNDDCRRYQKANNPEAVKKDDIFGLSPSREELMAEVQSVNVKVEALVDYLSKLVETTTNGLNGIAETLVD
Ga0315899_100419495F013517N/AMFESLFAAVLPVMKDLLWAAAGMLLTYALNKIQSYCS
Ga0315899_100419497F001018N/AMTQITSTKLDELSVIKLYEHYGALERSLPLLTPDSQDLAKAELEACANLRSEKVDRIYYAMASHEDALERIKKESDLIVQAKRHHEGQLKSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISSDPEFWHSEERANYCIEEEITTTKRVVLRSMSGEVLSERTEPKTTTKVLPNLDAIRDAYQNGKQLPLGVKVTQEYSVRSKRIFGEPRMDMAASEYPGQLLPENSSTD
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