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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031785 Open in IMG/M |
| Scaffold ID | Ga0310343_10009546 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5283 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.8367 | Long. (o) | -158.0236 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019327 | Metagenome / Metatranscriptome | 230 | Y |
| F032303 | Metagenome | 180 | N |
| F032309 | Metagenome / Metatranscriptome | 180 | N |
| F033761 | Metagenome / Metatranscriptome | 176 | Y |
| F046625 | Metagenome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310343_100095461 | F019327 | N/A | MFNFITLKPFNLDTKYITDIQEIIEKVITEKKDEYWKNYKDYSIFDQTMITVGLVNDKVKTFSSIYTRSFYDNDVYRLFNRFLISDDVREDGGSKMYRGDHRFLEMIDQQVKYVKTLGPKFYFLSRQRKNTRWLTWYFDKYNKKYNENLIVSKDQYRICGGSEYDCCQTLIYPKDMQIPFEKLYK |
| Ga0310343_100095462 | F046625 | GAG | VKLKRFIQVNNFLSNEEIDSFNYDIKQEFKSNTGDLTLYHQKIPISIIDKIKKCIGEFSIRHSHIYQLKQPYRLHCDSGDKGNSYYTIIVPLDKNPQGGLFIMNQWSNKAYSLDNYYTQNIQSVLSFEERKEKINEFNPDISLPDTIDFQHIKDKRGFSVKEYIDYEYNKAIMYPGEFYHCSQNIKNFTSKKSLAIFTNV |
| Ga0310343_100095463 | F033761 | GGAG | MTIYNKHEFYFLDSAYQEKHKELFAFFENLGVSIEINEDFAGLKTLLTSKDKDDYPYDFDPAFETRMDNSTAFVLYAKIGNEVVATYAAKKLSMTTFIEAMKEKFSGTYEDVSDILGISAYSSCQWVSKDHRGKKIGRVLDHLKKHICFDLMKCTNNYAIHKEALKEYHTEHLSYSNSKKLATIPNGDVGGAGEAIDKIYNITYITDIEWAEKQSEIKTLYSS |
| Ga0310343_100095464 | F032309 | GGA | MRTETKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNNQVDRMKLDDSESVNHYPGLKGDLIEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVSEYSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRQPQYQIIWQGIYKKQFRQLVMENK |
| Ga0310343_100095467 | F032303 | N/A | MIKHITESEALYFVSKQEKKDQWHNDFYFWKLHLIALKNWPWLKKFYRGGKWLGHFDDLKLNGVYWYNLIDDEMYDGFLISSKIGVGIKLGRWLEKNIKYKTNWSCCDRKYVKFNERLGFEVKSVDTIEKREVFLLCRKKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |