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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031785 Open in IMG/M |
| Scaffold ID | Ga0310343_10013549 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4493 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.8367 | Long. (o) | -158.0236 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001724 | Metagenome / Metatranscriptome | 645 | Y |
| F030401 | Metagenome | 185 | Y |
| F043348 | Metagenome | 156 | N |
| F072256 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310343_100135493 | F043348 | N/A | MSCTLAKHNRRIKTLRTELAGIHDPYELLAEVIADNERLRQIINTHDCHKGKP |
| Ga0310343_100135495 | F030401 | GGAG | MEALFAGSAIRTLRKMVKSGLITEKDLDTPPEGYFISMGYERELGTGRWVRVKRTLRGALPSLPVHKLPKYRNLLTNKITFDPVIYEKQL |
| Ga0310343_100135496 | F072256 | N/A | MKNNYKDLILQDPFVEFYPEPHKYYDLKRKCYVARSVSDVIKTTDYVSKNMEKAAIRGTKIHAAVQIWCETGDIPLALAYAEEYAKWVEHLVNYRMWETWEPVVNELRMIDRKRDIAGSVDTILQHKNTGMLCLADYKTQEKYSKKNHSLQIGGYVSLFYQNYPNLSLFSCRIIYITPDGIKTQEYNPNECMYDYEQARKLYFKNC |
| Ga0310343_100135499 | F001724 | N/A | MEVAKQKNTTQKPEQLEDDKPDYQEKITFLISTVAQGFILAWCLLVLSLGYVKLPNKLFGVDIPDQPRVDSTFAAGLLGNILGGLGISVNAAQGAKKKKKEDEKSTNNNNGEATQTIIIKQPLEIVTTKPDVIKAEKNSTKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |