NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310343_10016986

Scaffold Ga0310343_10016986


Overview

Basic Information
Taxon OID3300031785 Open in IMG/M
Scaffold IDGa0310343_10016986 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4065
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.8367Long. (o)-158.0236Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F002137Metagenome / Metatranscriptome590Y
F007173Metagenome / Metatranscriptome356Y
F058219Metagenome / Metatranscriptome135N
F094001Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310343_1001698611F001026GAGGMAKHTLVLDDMELTALISHLEGESEMMVESRLNCSNPSETPDRMEVLLNLVYAKAFTIGWDADKNPKVDFNLIENIDRIYKYK
Ga0310343_1001698612F094001AGGAGGMNELLLPPDTPILYEEGLWELCTDKAYEMMKHKRQFLDDDIFDYQIEYWTNKIFEANSHLRGID
Ga0310343_1001698614F002137AGGAGMRVTNHINKSKMKVKEVIEALSYYHGDDDITFYFLKNDTLTNCQVEDISFYSDTMGVEFTIQDTSEVMEEVDV
Ga0310343_100169863F007173AGGAGMQTITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKYTITLDEIVQNYMPFIPVYLIENEDEIKEVYSDRIDEDDNLFIFDRDRTPNEITLNVEWID
Ga0310343_100169867F058219AGGAGMSKSKKQLKKDLKYLKKHLDDNKEINQIIEHTKKIGISSEYFCEEFVFIPDGETPEETARFHDVEYLDITEFNYHHWISNKMEDY
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