NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310343_10040746

Scaffold Ga0310343_10040746


Overview

Basic Information
Taxon OID3300031785 Open in IMG/M
Scaffold IDGa0310343_10040746 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2768
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.8367Long. (o)-158.0236Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009812Metagenome312Y
F011410Metagenome291Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0310343_100407462F023621AGGAGGMDENWRNYMSLTERRIENIMKVMKKAKDYDMKVIWNNKLKQLFNRREAKAYERLEDQARMVH
Ga0310343_100407463F011410GAGGMKDLKIKLEWSTSDLLVWVILAISVGLMIVNIVTMYNMYSVIETMWLEIQQVKETNISLYQFIEEHRNDFD
Ga0310343_100407465F009812N/AMIEEFEIDWIPEDTGAPYEADEVFPEIPAHTIDKLCKKKFGHTNWARMGLMSPEELMGNPCEFDYENGIIYFKNAKLI
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