NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10001015

Scaffold Ga0315900_10001015


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10001015 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45221
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (56.60%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004208Metagenome / Metatranscriptome448Y
F014121Metagenome / Metatranscriptome265Y
F067687Metagenome / Metatranscriptome125N
F076003Metagenome / Metatranscriptome118Y
F089902Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100010151F014121GGAGMTNTAYQIWETFKAELTQPATDDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAG
Ga0315900_1000101511F004208GAGGMTYKLNEEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMVVFDDYFTNYTQSDNNGGHCVYECDAMDFTDFVRFKLCIDDYDAVDVDEVLK
Ga0315900_1000101523F089902N/AMTDRAQKLMTEIWEERHSWADTEEKLVSAVIRKTLDHCKTFVAQKMNNMSVIDKNDLIALSNELEQLP
Ga0315900_100010153F067687GGAGGMTDLSPKAQAIIDAADEVFSHGGRIRDGFASVLRVLADNVAPDDYRCFYGDKEYDAGMEGRNDEIREAILSIATELEAL
Ga0315900_100010156F076003GGAGMKLTAHELAVITDTLTHSLAVSNWNGYYTAQSRENVRNAIAGIMDSMSVEIITDKPNFTIDADAGI
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