NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10007441

Scaffold Ga0315900_10007441


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10007441 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14384
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F025465Metagenome201Y
F033727Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1000744113F025465N/AMDELTIITGKVNLDTTYLKIKISLEEIKEKHGQRTDLINSMERSLADLQQVKISYDAMEKELRAALQQNFRLEKLLMEEKFKVKDLEIQLKMKNVEL
Ga0315900_1000744121F033727N/AMREQAKVLSEANELTRLMIRFYLQKHELSLNAFSKIVEVRQPNLHKFMSGKSLSSRSIEKIGEFFSK
Ga0315900_100074414F008546N/AMKIEWWKLLIVFVSAIVLEANSIAGFKYLMNHNWFGMVLMAFVNPFLCLPLNHFTIEVKTFKQRIWIATAFSTGFVVGILTIRPFFI
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