NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10013666

Scaffold Ga0315900_10013666


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10013666 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9868
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011488Metagenome / Metatranscriptome290Y
F012346Metagenome281Y
F018910Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1001366619F018910N/AMKNLITEEFKEKFKAAFARFMNITIVSSTLIAGFGLGYYFQELKMKPKAVNETILNKEVRIAIDSEDKLIMMDRKTGGYTIYSDSIGRIIFKMYATKIASPVVIK
Ga0315900_1001366625F012346N/AMIFGFYYKNDKKEEIISRTISSSRLNAAKYFAARKQLELKPFLKVFGVKTII
Ga0315900_100136666F011488AGGAMTNEELIEELYHKAHKKGFFNELHEKVSELKQTKQIKCGYEIVRVAYDELKKIKLAQPFPHL
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Institute for Fundamental Biomedical Research
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