NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10059736

Scaffold Ga0315900_10059736


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10059736 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3952
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002985Metagenome / Metatranscriptome515Y
F015201Metagenome / Metatranscriptome256Y
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100597361F087066N/AHWSNLMTENQIHFIRGSCTTILLFAVGSLLAAIFLLPDKSNDELKNKSKFEVLDQYEGCSVIRYTDPTSRWHYFLKCS
Ga0315900_1005973610F002985N/AMSYVIACWRWGTPHAITANQETNQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK
Ga0315900_100597363F015201GGAGGMNKALIVYLVGRKKKVARKDVESKHAIAELKKQSAATF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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