NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10085646

Scaffold Ga0315900_10085646


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10085646 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3129
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F006503Metagenome / Metatranscriptome371N
F009318Metagenome / Metatranscriptome319Y
F025272Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100856461F009318N/ALLLFLLTACTNNRPWKVIEVRPKGDACEYVLSRSNGFGPQVKTLTDSCGRYRLFQTLSL
Ga0315900_100856466F001345N/AVNAEATILDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKILKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETKEEGKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTRLSHPD
Ga0315900_100856467F025272GAGMDILVYPILISALTTLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWMGVALTLPTCQWYLAPILGLASSATAIIIREWTFK
Ga0315900_100856468F006503N/AMDLQMTNEQFLIAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITYPLNAPANPEQ
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