NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10128155

Scaffold Ga0315900_10128155


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10128155 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2398
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F005558Metagenome396Y
F023834Metagenome208Y
F093528Metagenome106Y
F095162Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1012815511F095162GGAGGMENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPEAYKELLEKEKVSDEQEGKTWIDLNGSTISPRITARAKARGITLTQTDTDQGNNGGEA
Ga0315900_101281555F005558GGAGMDQDAMYWSELAELTHATQVERFNFCTCEDNEGQDNPYEDCPKEEK
Ga0315900_101281557F093528AGGMTEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPSKTINDVVKEEIEEKGESDEG
Ga0315900_101281558F003212AGAAGGMKDRYLVTLEIETYDGDPKEWDWEKLSTGEDVINIISSDFKGRVLPIEGEGDE
Ga0315900_101281559F023834GGAGMNKEYWQAKAELCRDLALMQIEEEETEKEAGMNLMRMTYALSMVEAYSEGKGENE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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