NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10163176

Scaffold Ga0315900_10163176


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10163176 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2038
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071173Metagenome122N
F085215Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_101631761F085215N/AGAEVYVLNNAGTFIPLDDSRFASFSIIGNTLVQSGQNEYLDKTINEFTVPEQVTFESVWIQRESDAKSLSKFIKDQWSKKQSVCELEVFSNPLISVGDIVTINYPSNGLDGTQKFMVSSINNSFDGGLSTKITTRSIYSL
Ga0315900_101631763F071173GGAGMITKFGKRFLTSYLSGNNSFTSKELALGIGSTTPNVKGNDTRLDFEFYRLPVELSSFNVLETGVDGDGDPTYSYFVTYKSTIPQDISGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFSGLDNPTSQGNTQDSNGDYTFLSKVSDSMVRVDVASDQTKEYINSLISDDISGYSINDTIAIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPESGTGDKIQELSLNNLFSNYTAAPNLPDPASIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKPGRPVDIEYKLQLDF
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