NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315900_10218656

Scaffold Ga0315900_10218656


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10218656 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1664
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F043404Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_102186563F016662GGAGMVYIVATTEVIYDEEYLIKEMLATGEYGINAHPISSEAIVEFVKDREWQIDHHLFLDKFDVPAQISIKDEDGTDLFFAKNKLE
Ga0315900_102186564F043404GAGGMIDTTDPLLNELAFHFVDLHNVGGIELEQWETAYKFVKHFYHTEEMVQIIIREKK
Ga0315900_102186566F008496N/AKELVEAGELKPLYDPKATIVVRKGYYYGSPSDSKFDLENADDISRTYWRLEALQETNNRNSRAQDKLKDYLVENFDELGEEHATEIANIFSIDLTKEVEVEFTVSIKATITIPVNEDVSDLSTYDFDVEISSNESKYEVEQFDADIDSIDERY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.