NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10311799

Scaffold Ga0315900_10311799


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10311799 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F028151Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_103117991F028151N/AELRDLGLDVAAVMLAIGFIYWIVYEIRDTAFQNGYWKGRAHGWEMHRRMTNIKAQSDEVFDYDKN
Ga0315900_103117993F002357AGGAGMAFNLEDYEDVATLNKWFITNYPMGRSDLSVVSFDAEKGYILIQATLWRDSKDAAPAVSNLAFGSRETYIPNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMRKVETNSSFKEKLESRQNMYGKPGSKSAQIETILRDSFEADKKPEPVAWSVGDVVAEIGASTPNEPPACEHGHILKQGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0315900_103117994F007469AGGAGGMGELQIIDGSGLTATFTDDGVKVEPSRVTCDLCNDDRLLHEGDLLRCYSC
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