NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318523_10342013

Scaffold Ga0318523_10342013


Overview

Basic Information
Taxon OID3300031798 Open in IMG/M
Scaffold IDGa0318523_10342013 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026645Metagenome / Metatranscriptome197Y
F092476Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0318523_103420131F026645GGAGGMRNVLVIAAVVVGALLVVHAGKGVTGKDPPPHGHSGSTALSLKTMQTYRTITVSPTTVNCGHYKQGNYPNKSKGALGFPWGTCQVGDRVKGKDPITITYNGMQGYVYVHAGWAMPNGNEVGTPWHPCSSAGHHAVACSGKNGLPGYNQYTVRNFSPQSPAPTQLTGNNVCDVNFRPAGGC
Ga0318523_103420132F092476N/AAATLVQFRVAPDPAPGFWWSVFIQTLWALLVVILLAAVALAVRRSGFRIRVEREAVRYGTADDYGGGHA
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