NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10016419

Scaffold Ga0310122_10016419


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10016419 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4388
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017324Metagenome / Metatranscriptome241Y
F064110Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100164192F017324GGAGMGYLQTHRGLISERTPIDTTSALRGRVYELRYDSTTASKTLYLVLGLNLYPRGGGKSKQLLHCLDLDEIPIAEVRKLIRSASDIVTGYKKGLEHQQLIIEGRSTAIYDGQLKKLQKRIPGTYKTFKLNKITKFELTNYDFISITDTRTKKKFGIVDED
Ga0310122_100164195F064110AGGAGMPRAKKKTAMKKSASRKTTPRRKTTGRRRSEPGDVFWNKVIAGFKKLLSPAFPK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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