NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10022235

Scaffold Ga0310122_10022235


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10022235 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3671
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F007035Metagenome359Y
F012781Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100222353F000423N/AMTINKAIFYIKYYAKKHDCIIERKATLDEECFEGVHKIHGYPYKKYVDVNATEEVNNGKPQYRTASKKWEINEQPTI
Ga0310122_100222354F012781N/AMFNKKGESQMFGKDKNAILTTTLIVKVRKYKDNQPFFSLYDTPSMADQNKADEVVTKLNDLEQYNVQEIKEGWQTEYYSVPMTL
Ga0310122_100222357F007035AGGMYFILENCSGSFYTEALANDEFPSLQAAEKKLQALEELKPKGKFFIVTRVQA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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