NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10045271

Scaffold Ga0310122_10045271


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10045271 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2378
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F006641Metagenome / Metatranscriptome368Y
F007893Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100452712F003161GGAGGLSRAGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVSTLDMGGALYRTATIPFDVQLYEEVSIAP
Ga0310122_100452713F007893GGAGMAEPFGVHFEVTGPVFDGSGLRVMQGIINRGLFDIAVLEGANKVKDQLYGPAASQYWKSDKSQRHGAKSRDLKRRVAASQPSDNLAIFNAGGIDYAPKIEGLYHMFENATKEIERNKGALLDKYIGDALVEAFD
Ga0310122_100452715F006641AGGAGGMPKVTCIQSFSSGDGIAYESGVEYDVPAATVKANPDYFKQSGTAENKMEDTAEDKSADEATEEVTEEAT
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