NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10064833

Scaffold Ga0310122_10064833


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10064833 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1905
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F002874Metagenome / Metatranscriptome524Y
F012919Metagenome276Y
F038414Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100648333F000615N/AVSGLERPENIMCRIRSFYECSDGTLGWTEMVLSYEDDIAGMIKHLGKGGRMVTTEHIDLV
Ga0310122_100648335F012919GAGMNISRKKLNLEIVKYLKNGGKITKLPDGPNYHFQPYGVRVTPGDPKVDLTLSDTPTTKQQISYVKKNSL
Ga0310122_100648336F038414GAGGMMTDELNKKRTSPKTIQIQNSKTTRSRAKWLWISTSDEEGVGQGTYDVGSRAMKRERLADKKLRAKQNKAR
Ga0310122_100648338F002874N/ANIMKEKIDLSLNRSLSELESSYWEFVEATEGEDSSEWSKSVQVDISALEGYLMKMEVL
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