Scaffold Ga0310122_10093747

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310122_10093747

Scaffold Ga0310122_10093747

Overview

Basic Information
Taxon OID	3300031800 Open in IMG/M
Scaffold ID	Ga0310122_10093747 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1509
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.6947	Long. (^o)	-146.6612	Alt. (m)		Depth (m)	3678
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100937471	F090254	GAGG	MGIEETNYSAIDILNIVDGAELVIIVRDVYLCVWHGGNVVEIHDIREASIDPEIQTLPMWAERTLLTVHDAIDDYFEGLDFDNENEGLTTGPIRVIVNTESDDPTEVN
Ga0310122_100937472	F106167	AGG	VEIGDIVKLHINPSVDWMHNYFEETFEVVGFPTETGVRVKMIGTDPEWHWIIGKADFQIIEEED
Ga0310122_100937474	F084099	GAGG	MKIGDIVTMNHALTRERYGLGLIQKIVPAGEFPPGNNPRLVYHILWPDGGISCQYDVEIVLVGRVE

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