NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10151731

Scaffold Ga0310122_10151731


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10151731 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1110
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F031891Metagenome / Metatranscriptome181N
F064236Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0310122_101517311F064236N/ASNANVVTGGDGLMKYEMPRRQGIPLANNVTITNYYTNRDARTGASNFINFVRYSKD
Ga0310122_101517312F000704AGGTGGMPHLNGEIQPSQVKSIAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTDGSNQPLDTFPRIYSDTDSGLLLNEGNDTAFNQTYTLNPDMTGILYKISLNYCAVLTCSAYTNGGLNIGGLHIKITERSTNDSLLYENTFQSGAATLSATGTSMHWFTQDIVETIKIRKGNPVDIQLNLITVVTGTNTRQEGYAPVAPYLKTAVMKSFYETGISLHMHPDLSHADGVFKYKKERVSLLGQ
Ga0310122_101517313F031891GAGLASELIPPELIPIVWFGCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRIL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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