NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10012344

Scaffold Ga0310121_10012344


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10012344 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6588
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F024888Metagenome204Y
F025300Metagenome202Y
F028833Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_1001234411F028833N/AMSNLTYLWSDEMVDTIAKKVAEEPMEMVDEGNYEYLPKRPQHVIDEERGDAIRQWRKEQAQMEMFDDQVMNWSGLR
Ga0310121_1001234413F024888N/AMKEKMDLKNIYKMVADEVDARIKIDSKGKTPDEWAQLKGFEDWLGYAAWSRHTGGFYEMSVQMLKAEWKKQDPEEFARQKKIQSDQSLREHSYITLPPEAWPTSVPNKNDFASKFIGNKKKKWQPVHKSNFTAEQLEKVYDDFGISGEPVEYT
Ga0310121_100123445F001048N/AMKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMSIWNACGVKDIPTLAKAYGIK
Ga0310121_100123448F025300AGGAMKKINVETLVPDNFKFLARDLDGKTFVFENEPSIATDIACDNWDVKEGEILQVTQPVFLSEEGITHTGVGSELGDWRDSLTEINNEDVD
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