NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10020910

Scaffold Ga0310121_10020910


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10020910 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4770
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011704Metagenome / Metatranscriptome288Y
F015261Metagenome / Metatranscriptome256Y
F024333Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100209102F024333GGAGMSIGLKDKFGIWLDAVKDKIFNVFGRDKSEKEENLYETRWVWYHSALVIELFIIIILLWYIAI
Ga0310121_100209105F015261AGGAGMPVDIVWEDGNATVSILCDGCDKEYDVLTKDTAGLEMCSFCGHYLEVSSETGETDDSEEDSWD
Ga0310121_100209109F011704GGAMVFSKYWIWWSSLDGIIFFYIMNIKDFQELIDLTDYLDTSGEYLIRKFTDGGNYMIIDTYGDFLILKRDEVDTVFSTIWNDLYGPISEEIPHILN
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