NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310121_10022621

Scaffold Ga0310121_10022621


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10022621 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4544
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001955Metagenome612Y
F003082Metagenome / Metatranscriptome508Y
F101321Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_100226211F003082GGAGMRYQILKILRARRSAREKRNKSIRWMRYLVFCIIIGLLVLFTVGCSGVKHVLQIEEPTDHTSGDDGGKLKYKIIWGDINQKE
Ga0310121_1002262110F101321AGGAGMKDLIVPTKRTKICDNCHGNGYITVVDKQNLTQVKQCWVCES
Ga0310121_100226214F001955GGAGMIKELKTLLQKYFGTSSPKPIETKKPTPAKVVRPREKLSALVEEIGNDMFGVRVRVEWGRCPYCESVTQMLSTQIGYFRCSTCRELTKQYVNGHIAYLPIDGGPDPLDFRPKDG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.